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Pipeline sensitivity and precision

Variant Type Measure Sensitivity Precision Truth set
Single Nucleotide Variants Exact 0.9971 0.9989 HG002 high confidence regions
Single Nucleotide Variants 95% credible interval 0.9971-0.9972 0.9989-0.9989 HG002 high confidence regions
Indels Exact 0.9912 0.9956 HG002 high confidence regions
Indels 95% credible interval 0.9911-0.9914 0.9955-0.9957 HG002 high confidence regions
Copy Number Variants (>2Kb) Exact 0.9795 N/A Clinically significant CNVs detected by standard of care tests in accredited labratories
Copy Number Variants (>2Kb) 95% credible interval 0.9609-0.9929 N/A Clinically significant CNVs detected by standard of care tests in accredited laboratories
Short Tandem Repeat Expansions Exact 1 0.9333 STR expansion tests (positive and negative) at target loci performed in accredited laboratories
Short Tandem Repeat Expansions 95% credible interval 0.9343-1 0.8252-0.9943 STR expansion tests (positive and negative) at target loci performed in accredited laboratories
Single Nucleotide Variants and Indels impacting the mitochondrial genome Exact 1 N/A Variants detected at ≥5% heteroplasmy in accredited laboratories
Single Nucleotide Variants and Indels impacting the mitochondrial genome 95% credible interval 0.9566-1 N/A Variants detected at ≥5% heteroplasmy in accredited laboratories