GMS interpretation portal

The GMS Interpretation Portal allows users to: 1. See an overview of cases ready for NHS GLH review, and track overall case status. 2. Review findings from Interpretation Services such as Tiering and Exomiser. 3. Download any available files and link out to Decision Support Systems 4. Complete a reporting outcomes questionnaire to close a case. 5. Save work in progress as draft and return to it later e.g., when completing the outcomes questionnaire. 6. Review alignment and variant calls from BAM and VCF files using IGV.js.

The GMS Interpretation Portal is accessible here.

Note

You must be on the HSCN (previously the N3) network in order to access the interpretation portal.

Click “Login with NGIS AD Credentials” – these will be your NHS.net username and password which will have been set up by the Genomics England Service Desk.

If you encounter login issues please contact the Genomics England service desk (http://bit.ly/ge-servicedesk ).

Upon logging into the GMS BETA Interpretation Portal with AD credentials the user will see a list of their cases which are “To Be Reviewed”.

In some cases, flags may be displayed in the Interpretation Portal and in the CIP-API (see CIP-API flags)
with alerts for complex scenarios or potential data quality issues. Please see case flags for a summary and description of flags.

Further details of how to use the GMS Interpretation Portal can be found in the accompanying user guide: “Genomics England Interpretation Portal for the NHS Genomic Medicine Service” or at https://ip-portal-help.genomicsengland.co.uk.